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PSEImporter

Loading PyMOL Session Files

CueMol can load PyMOL session files (pse files) for users migrating from PyMOL.

Execute menu "File" → "Open scene..." to display the Open scene dialog, select PyMOL Session (**.pse) from the file format options, and open the file to load the pse file.

Support Status

In the current implementation (2.2.1.349), the following features are implemented to load correctly:

  • Molecular coordinates and colors
    However, regarding colors, information is lost when the loaded pse is saved as qsc

  • Sticks representation

  • Spheres representation
  • Cartoon representation
  • Lines representation
  • Surface representation
  • Labels (however, position offsets are ignored)

We plan to gradually expand supported features in the future.